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SequencesinputPasteoruploadyoursetofsequencesinFASTAformat.SequencestoalignClickheretousethesamplefile.
ThetemplatesarealignedusingstruturalalignerslikesaporTMalignandthesestructurebasedalignmentsareusedasatemplateforrealigningtheoriginal ...
由FArmougom著作·2006·被引用542次—Expressoisamultiplesequencealignmentserverthatalignssequencesusing...3D-CoffeeisbasedontheT-Coffeealgorithm(12),aheuristicmethodthat ...
ThischapterisaquickoverviewonhowtorunT-Coffeealignmentusing...Usingthis,ExpressowillBLASTyoursequencesagainstthePDBdatabase, ...
T-CoffeecanalignProtein,DNAandRNAsequences.Itisalsoabletocombinesequenceinformationwithproteinstructuralinformation(3D-Coffee/Expresso), ...
Bydefault,structuresandstructuralpairwisealignmentsarestoredinyourlocal~/.t_coffee/cache/allowingExpressotorunfasterifyoureusesimilar ...